Ashish Jain, Karin S. Dorman, Geetu Tuteja. "Factor analysis-clustering model for integrating and clustering multi-omics dataset". [Manuscript in Preparation]
Anilisa Biswas*, Ashish Jain*, Haninder Kaur, Geetu Tuteja. "Genome-wide mapping of Hypoxia inducible factor α (HIF-1α) binding sites in the mouse placenta". [Manuscript in Preparation]
* Equal Contribution
Ashish Jain, Mayank Tandon. "MAFDash: An easy-to-use dashboard builder for mutation data". [F1000 Research, 2022]
Regan Scott, Ha Vu, Ashish Jain, Khursheed Iqbal, Geetu Tuteja, Michael J. Soares. "Conservation at the uterine–placental interface". [PNAS, 2022]
Ashish Jain, Geetu Tuteja. "PlacentaCellEnrich: PlacentaCellEnrich: A tool to characterize gene sets using placenta cell-specific gene enrichment analysis". [Placenta, 2020]
Jiude Mao, Ashish Jain, et al. "Bisphenol A and Bisphenol S Disruptions of the Mouse Placenta and Potential Effects on the Placenta-Brain Axis". [PNAS, 2020]
Rebekah Starks, Anilisa Biswas, Ashish Jain, Geetu Tuteja. "Combined analysis of dissimilar promoter accessibility and gene expression profiles identifies tissue-specific genes and actively repressed networks". [Epigenetics & Chromatin, 2019]
Megan A. Sheridan, Ying Yang, Ashish Jain, et al. "Early onset preeclampsia in a model for human placental trophoblast". [PNAS, 2019]
Huy Nguyen, Ashish Jain, Oliver Eulenstein, Iddo Friedberg. "Tracing the Ancestry of Operons in Bacteria". [Bioinformatics, 2019]
Ashish Jain, Geetu Tuteja. "TissueEnrich: Tissue-specific gene enrichment analysis". [Bioinformatics, 2018]
Majd Abdulghani, Ashish Jain, Geetu Tuteja. "Genome-Wide Enhancer Identification in the Placenta". [Placenta, 2018]
Ashish Jain, Toshihiko Ezashi, R. Michael Roberts, Geetu Tuteja. "Deciphering transcriptional regulation in human embryonic stem cells specified towards a trophoblast fate". [Scientific Reports, 2017]
Ashish Jain, Thanh Nguyen, Jake Y. Chen. "SPINNER: Software to Rank and Compare Phenotype-specific Genes in Molecular Networks", Oral Presentation, MCBIOS Annual Conference, Little Rock, AR, USA, 2015.